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Bug #42410 SOAP parsing problem on Item-Tags
Submitted: 2007-08-24 07:19 UTC Modified: 2007-09-01 01:00 UTC
Votes:1
Avg. Score:1.0 ± 0.0
Reproduced:0 of 0 (0.0%)
From: andreas dot bohne-lang at medma dot uni-heidelberg dot Assigned:
Status: No Feedback Package: SOAP related
PHP Version: 5.2.3 OS: MacOSX 1.4
Private report: No CVE-ID: None
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From: andreas dot bohne-lang at medma dot uni-heidelberg dot
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PHP Version: OS:

 

 [2007-08-24 07:19 UTC] andreas dot bohne-lang at medma dot uni-heidelberg dot
Description:
------------
The built-in SOAP drop the value of the record. eg: the '2005 Jul 1' of the PubDate. NuSOAP can handle this.


<DocSum>
        <Id>15980568</Id>
        <Item Name="PubDate" Type="Date">2005 Jul 1</Item>
        <Item Name="EPubDate" Type="Date"></Item>
        <Item Name="Source" Type="String">Nucleic Acids Res</Item>
        <Item Name="AuthorList" Type="List">
                <Item Name="Author" Type="String">Bohne-Lang A</Item>


...

stdClass Object
(
    [DocSum] => stdClass Object
        (
            [Id] => 15980568
            [Item] => Array
                (
                    [0] => stdClass Object
                        (
                            [Name] => PubDate
                            [Type] => Date
                        )

                    [1] => stdClass Object
                        (
                            [Name] => EPubDate
                            [Type] => Date
                        )

                    [2] => stdClass Object
                        (
                            [Name] => Source
                            [Type] => String
                        )


Reproduce code:
---------------
<?

        $client = new SoapClient('http://www.ncbi.nlm.nih.gov/entrez/eutils/soap/eutils.wsdl',array('trace' => 1));
        $result = $client->__soapcall('run_eSummary',array( 'parameters' => array('db' => 'pubmed', 'id'=>'15980568')));

        echo "LastRequestHeaders:\n" . $client->__getLastRequestHeaders()   . "\n";
        echo "LastRequest:\n" . $client->__getLastRequest()   . "\n";
        echo "LastResponseHeaders:\n" . $client->__getLastResponseHeaders()  . "\n";
        echo "LastResponse:\n" . $client->__getLastResponse() . "\n";
        print_r($result);
?>


Expected result:
----------------
NuSOAP output:

Array
(
    [DocSum] => Array
        (
            [Id] => 15980568
            [Item] => Array
                (
                    [0] => Array
                        (
                            [!Name] => PubDate
                            [!Type] => Date
                            [!] => 2005 Jul 1
                        )

                    [1] => Array
                        (
                            [!Name] => EPubDate
                            [!Type] => Date
                        )

                    [2] => Array
                        (
                            [!Name] => Source
                            [!Type] => String
                            [!] => Nucleic Acids Res
                        )

                    [3] => Array
                        (
                            [Item] => Array
                                (
                                    [0] => Array
                                        (
                                            [!Name] => Author
                                            [!Type] => String
                                            [!] => Bohne-Lang A
                                        )



Actual result:
--------------
LastRequestHeaders:
POST /entrez/eutils/soap/soap_adapter_1_5.cgi HTTP/1.1
Host: www.ncbi.nlm.nih.gov
Connection: Keep-Alive
User-Agent: PHP-SOAP/5.2.3
Content-Type: text/xml; charset=utf-8
SOAPAction: "esummary"
Content-Length: 321


LastRequest:
<?xml version="1.0" encoding="UTF-8"?>
<SOAP-ENV:Envelope xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/" xmlns:ns1="http://www.ncbi.nlm.nih.gov/soap/eutils/esummary"><SOAP-ENV:Body><ns1:eSummaryRequest><ns1:db>pubmed</ns1:db><ns1:id>15980568</ns1:id></ns1:eSummaryRequest></SOAP-ENV:Body></SOAP-ENV:Envelope>

LastResponseHeaders:
HTTP/1.1 200 OK
Date: Fri, 24 Aug 2007 07:14:09 GMT
Server: Apache
Content-length: 2278
Content-Type: text/xml; charset="UTF-8"
Vary: Accept-Encoding
Connection: close

LastResponse:
<?xml version="1.0"?>
<SOAP-ENV:Envelope xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" >
<SOAP-ENV:Body><eSummaryResult xmlns="http://www.ncbi.nlm.nih.gov/soap/eutils/esummary">
<DocSum>
        <Id>15980568</Id>
        <Item Name="PubDate" Type="Date">2005 Jul 1</Item>
        <Item Name="EPubDate" Type="Date"></Item>
        <Item Name="Source" Type="String">Nucleic Acids Res</Item>
        <Item Name="AuthorList" Type="List">
                <Item Name="Author" Type="String">Bohne-Lang A</Item>
                <Item Name="Author" Type="String">Groch WD</Item>
                <Item Name="Author" Type="String">Ranzinger R</Item>
        </Item>
        <Item Name="LastAuthor" Type="String">Ranzinger R</Item>
        <Item Name="Title" Type="String">AISMIG--an interactive server-side molecule image generator.</Item>
        <Item Name="Volume" Type="String">33</Item>
        <Item Name="Issue" Type="String">Web Server issue</Item>
        <Item Name="Pages" Type="String">W705-9</Item>
        <Item Name="LangList" Type="List">
                <Item Name="Lang" Type="String">English</Item>
        </Item>
        <Item Name="NlmUniqueID" Type="String">0411011</Item>
        <Item Name="ISSN" Type="String">0305-1048</Item>
        <Item Name="ESSN" Type="String">1362-4962</Item>
        <Item Name="PubTypeList" Type="List">
                <Item Name="PubType" Type="String">Journal Article</Item>
        </Item>
        <Item Name="RecordStatus" Type="String">PubMed - indexed for MEDLINE</Item>
        <Item Name="PubStatus" Type="String">ppublish</Item>
        <Item Name="ArticleIds" Type="List">
                <Item Name="pii" Type="String">33/suppl_2/W705</Item>
                <Item Name="doi" Type="String">10.1093/nar/gki438</Item>
                <Item Name="pubmed" Type="String">15980568</Item>
        </Item>
        <Item Name="DOI" Type="String">10.1093/nar/gki438</Item>
        <Item Name="History" Type="List">
                <Item Name="pubmed" Type="Date">2005/06/28 09:00</Item>
                <Item Name="medline" Type="Date">2005/08/11 09:00</Item>
        </Item>
        <Item Name="References" Type="List"></Item>
        <Item Name="HasAbstract" Type="Integer">1</Item>
        <Item Name="PmcRefCount" Type="Integer">1</Item>
        <Item Name="FullJournalName" Type="String">Nucleic acids research</Item>
        <Item Name="SO" Type="String">2005 Jul 1;33(Web Server issue):W705-9</Item>
</DocSum>

</eSummaryResult>

</SOAP-ENV:Body>
</SOAP-ENV:Envelope>
stdClass Object
(
    [DocSum] => stdClass Object
        (
            [Id] => 15980568
            [Item] => Array
                (
                    [0] => stdClass Object
                        (
                            [Name] => PubDate
                            [Type] => Date
                        )

                    [1] => stdClass Object
                        (
                            [Name] => EPubDate
                            [Type] => Date
                        )

                    [2] => stdClass Object
                        (
                            [Name] => Source
                            [Type] => String
                        )

                    [3] => stdClass Object
                        (
                            [Item] => Array
                                (
                                    [0] => stdClass Object
                                        (
                                            [Name] => Author
                                            [Type] => String
                                        )

                                    [1] => stdClass Object
                                        (
                                            [Name] => Author
                                            [Type] => String
                                        )

                                    [2] => stdClass Object
                                        (
                                            [Name] => Author
                                            [Type] => String
                                        )

                                )

                            [Name] => AuthorList
                            [Type] => List
                        )

                    [4] => stdClass Object
                        (
                            [Name] => LastAuthor
                            [Type] => String
                        )

                    [5] => stdClass Object
                        (
                            [Name] => Title
                            [Type] => String
                        )

                    [6] => stdClass Object
                        (
                            [Name] => Volume
                            [Type] => String
                        )

                    [7] => stdClass Object
                        (
                            [Name] => Issue
                            [Type] => String
                        )

                    [8] => stdClass Object
                        (
                            [Name] => Pages
                            [Type] => String
                        )

                    [9] => stdClass Object
                        (
                            [Item] => stdClass Object
                                (
                                    [Name] => Lang
                                    [Type] => String
                                )

                            [Name] => LangList
                            [Type] => List
                        )

                    [10] => stdClass Object
                        (
                            [Name] => NlmUniqueID
                            [Type] => String
                        )

                    [11] => stdClass Object
                        (
                            [Name] => ISSN
                            [Type] => String
                        )

                    [12] => stdClass Object
                        (
                            [Name] => ESSN
                            [Type] => String
                        )

                    [13] => stdClass Object
                        (
                            [Item] => stdClass Object
                                (
                                    [Name] => PubType
                                    [Type] => String
                                )

                            [Name] => PubTypeList
                            [Type] => List
                        )

                    [14] => stdClass Object
                        (
                            [Name] => RecordStatus
                            [Type] => String
                        )

                    [15] => stdClass Object
                        (
                            [Name] => PubStatus
                            [Type] => String
                        )

                    [16] => stdClass Object
                        (
                            [Item] => Array
                                (
                                    [0] => stdClass Object
                                        (
                                            [Name] => pii
                                            [Type] => String
                                        )

                                    [1] => stdClass Object
                                        (
                                            [Name] => doi
                                            [Type] => String
                                        )

                                    [2] => stdClass Object
                                        (
                                            [Name] => pubmed
                                            [Type] => String
                                        )

                                )

                            [Name] => ArticleIds
                            [Type] => List
                        )

                    [17] => stdClass Object
                        (
                            [Name] => DOI
                            [Type] => String
                        )

                    [18] => stdClass Object
                        (
                            [Item] => Array
                                (
                                    [0] => stdClass Object
                                        (
                                            [Name] => pubmed
                                            [Type] => Date
                                        )

                                    [1] => stdClass Object
                                        (
                                            [Name] => medline
                                            [Type] => Date
                                        )

                                )

                            [Name] => History
                            [Type] => List
                        )

                    [19] => stdClass Object
                        (
                            [Name] => References
                            [Type] => List
                        )

                    [20] => stdClass Object
                        (
                            [Name] => HasAbstract
                            [Type] => Integer
                        )

                    [21] => stdClass Object
                        (
                            [Name] => PmcRefCount
                            [Type] => Integer
                        )

                    [22] => stdClass Object
                        (
                            [Name] => FullJournalName
                            [Type] => String
                        )

                    [23] => stdClass Object
                        (
                            [Name] => SO
                            [Type] => String
                        )

                )

        )

)


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 [2007-08-27 07:55 UTC] aboh24 at gmx dot de
Same problem. 

I could not "Edit Submission" because my email address for this bug war too long for your system (the last 2 charaters are cropped) and I forgot my password :/

I will reopen this on another _shorter_ email address.
 [2007-09-01 01:00 UTC] php-bugs at lists dot php dot net
No feedback was provided for this bug for over a week, so it is
being suspended automatically. If you are able to provide the
information that was originally requested, please do so and change
the status of the bug back to "Open".
 
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